HLA MHC Inf & Imm Evolution Population Genetics
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HLA-RELATED LINKS
M. Tevfik DORAK
ASHI (ASHI2010) EFI (EFI2010)
BSHI AST BTS ASEATTA
(2009 / APHIA2010)
ASH (ASH2009)
ASHG (ASHG2010)
HLA Dictionary 2008 Molecular Genetics of the MHC by Rhodes & Trowsdale Extended MHC Poster (Horton, 2004)
WHO Nomenclature & HLA Sequences at
ANT dbMHC (NCBI)
MHC Haplotype Project (Sanger) CNV at 6p21.3 in Database of Genomic Variants
Tissue Antigens Human Immunology Int J Immunogenetics / EJI Immunogenetics Genes
& Immunity
Complete MHC Sequence Extended
MHC Sequence MHC Map
MHC-X Annotated MHC Gene List (Shiina, 2004)
Human
Epigenome Project (Chromosome 6 Data): Rakyan, 2004 & Eckhardt, 2006
HLA Nomenclature HLA Nomenclature Committee Reports
(2004: PDF) BMDW
HLA Look Up Tables
Nomenclature
for the Description of Sequence Variations NCBI
Genetic Associations Database
HuGE Navigator
IPD (Immuno
Polymorphism Database) Allele
Frequencies
IMGT/HLA Immunogenetics Database IMGT IRIS:
Immunogenetic Related Information Source
CD Antigens and KIR Nomenclature CD Listing 2002 & 2005
HUGO
CD Molecules List Human CD Poster
NK
and HLA Polymorphism KIR Book by Carrington & Norman
KIR Sequence Database NK Cell Receptors C1 C2 Epitopes Bw4 Bw6 List
(at ANT)
IHWG HLA Typing Protocols
IMGT Cell Line Database (search) & Complete Listing IHWG
Cell Bank ECACC - IHW Cell Lines ASHI/NMDB Cell Repository
Bone Marrow Donors Worldwide World Marrow Donor Association
HLA
Peptide Binding Predictions:
BIMAS SYFPEITHI
HLALIGAND
MHCBN MAPPP TEPITOPE EPIPREDICT
PREDEP MHC-Thread
MHC-Peptide
Database (MHCPEP) HLA Binding Motif Scanner HLA Ligand-Motif Online Database
KEGG Antigen Processing and Presentation Pathways
IMGT BioInformatics Tools NCBI
BioInformatics Tools
Human Chr 6 Project at the Sanger Centre Vega Human Chr 6 MHC Region Haplotypes
Genes on Chr 6 NCBI Chr 6 Map Ensemble Chr 6
MOUSE: Chromosome 17 Map Class III & Class II Sequences H-2 Haplotypes of Strains
Jackson Lab: Mouse Strains Mouse Genome Informatics Mouse Genetics by L Silver Origins
of Inbred Mice by HC Morse III (Ed)
Michigan Transplant Center MHC
and Transplantation ASEATTA
Tissue Typing
Education Primer
Histocompatibility Molecules in Kimball's Biology HLA
Biosynthesis (Animations) MHC Animations (Serotec)
Nei Lab Potts Lab Penn Lab Thomson Lab LGD
@ NCI Trowsdale
Lab Parham Lab Kulski
Lab
Laboratory in Genetics and Genomic Medicine of
Inflammation: MHC
HLA-A,B,DR Haplotype Frequencies (USA)
Essentials of Genetics Basic Population Genetics BioInformatics Tools HFE
ASHI 2001 Biostatistics & Population Genetics Workshop
Notes
Gene[VA] Tools for Genetic Data Analysis
(AGP,
Universite de Geneve, Switzerland):
HLA
Data Analysis (HWE, LD, Association) (EFI2006 Teaching Session)
Arlequin v3.1 (2005) PyPop
(HLA & HWE/LD) MIDAS
A Lecture on Linkage Disequilibrium
EH LD Software Haploview
(tutorial)
Online LD Analysis Online HWE Analysis HWE for
SNPs Constrained LD Value
PopGene (HWE, LD,
genetic distance, etc) Genetic Data Analysis (GDA) (Multilocus LD)
MultiLocus Pop Genet Data Analysis Package HAPLOTYPER PHASE v2.0
UNPHASED
Tools for
Pop Genet Analysis Genetic Analysis Software Arlequin v3.01 PHYLIP CLUMP TDT MVSP
Cold Spring Harbor Laboratory: DNA
Learning Center Online Immunology Book
ASHI Links
BSHI
Links Immunology
Links Immunology Journals Medline PubMed
Central
Links to Evolution-Related Sites Evolution Glossary Genetic
Epidemiology Glossary Real Time PCR
Electronic Statistics Textbook and
Glossary InStat Guide to Statistical Tests BioStatistics
MHC
& Leukemia (PPT) HLA-DR53 Fact File HLA
& Statistics HLA & Population Genetics Genetic Epidemiology
Address
for bookmark: http://www.dorak.info/hla/link.html
Compiled by M. Tevfik DORAK, MD, PhD
Last
updated on 1 November 2009
HLA MHC Inf & Imm Evolution Population Genetics
Genetics Genetic Epidemiology Epidemiology Biostatistics Glossary Homepage