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HLA-RELATED LINKS

M. Tevfik DORAK

ASHI   EFI (EFI2014)   BSHI   AST   BTS   ASEATTA    ASH    ASHG

ASHI Training Opportunities in US Laboratories for Visiting Scientists and Technologists

IMGT Web Resources   HLA Nomenclature 2010   HLA Dictionary 2008  

ASHI University    Current Topics in Histocompatibility & Immunogenetics    IMGT Education (Tutorials)

EuroTransplant Resources: Eurotransplant Manual: Histocompatibility Testing    Histocompatibility & Immunogenetics Notes

Extended MHC Poster (or via Horton, 2004)    dbMHC (NCBI)

MHC Haplotype Project: UCL & Sanger    CNV at 6p21.3 in Database of Genomic Variants

Bioinformatics@NMDP: HaploStats    Haplotype Frequencies    Pedigree Analysis Tool 

Tissue Antigens    Human Immunology    Int J Immunogenetics / EJI    Immunogenetics    Genes & Immunity

Complete MHC Sequence    xMHC Gene List (XLS; TXT)   MHC-X   Annotated MHC Gene List (Shiina, 2004)

Human Epigenome Project (Chromosome 6 Data): Rakyan, 2004 & Eckhardt, 2006

HLA Nomenclature    HLA Nomenclature Committee Reports    BMDW HLA Look Up Tables

Nomenclature for the Description of Sequence Variations   NCBI Genetic Associations Database   HuGE Navigator

IPD (Immuno Polymorphism Database)    Allele Frequencies    IMGT/HLA Allele Ethnicity Tool

IMGT/HLA Immunogenetics Database    IRIS: Immunogenetic Related Information Source   IDAWG

CD Antigens and KIR Nomenclature   CD Listing 2002 & 2005   HUGO CD Molecules List   Human CD Poster 2010

NK and HLA Polymorphism   KIR Book by Carrington & Norman

KIR Sequence Database    NK Cell Receptors    C1 C2 Epitopes    Bw4 Bw6 List    Matching Determinants List at EuroTransplant

IMGT Cell Line Database (search) & Complete Listing   IHWG Cell Bank   ECACC - IHW Cell Lines (Search)  

 Bone Marrow Donors Worldwide    World Marrow Donor Association

HLA Peptide Binding Predictions:

(see Lin, 2008-Table 4; Lin, 2008-Table 2; Wang, 2010)

 

BIMAS@NIH   SYFPEITHI  RANKPEP (info)  MHCBN   MAPPP   PREDEP   IEDB: I / II (tutorial)   NetCTLpan (ref)   NetMHCcons (ref)

 Cancer Immunity Web Tools (list)

MHC-Peptide Database (MHCPEP)    HLA Binding Motif Scanner    HLA Ligand-Motif Online Database

KEGG Antigen Processing and Presentation Pathways

 EBI: Tools     NCBI BioInformatics Tools     HLAMiner (Warren et al, 2012)

Sanger MHC Haplotype Project (Paper)   NCBI Chr 6 Map    Ensemble Chr 6    VEGA Chr 6    VEGA: MHC Region

MOUSE:  Chromosome 17 Map    H-2 Haplotypes of Strains

 Mouse Genome Informatics    Mouse Genetics by L Silver   Origins of Inbred Mice by HC Morse III (Ed)

 Histocompatibility Molecules in Kimball's Biology   MHC & Transplantation   ASEATTA Tissue Typing Education Primer

  Animations (AbDSerotec)   Animations from Kuby  

LGD @ NCI    Trowsdale Lab    Kulski Lab    Michigan Transplant Center 

Laboratory in Genetics and Genomic Medicine of Inflammation: MHC

Essentials of Genetics    Basic Population Genetics   BioInformatics Tools    HFE

Gene[VA] Tools for Genetic Data Analysis (AGP, Universite de Geneve, Switzerland)

PyPop (HLA & HWE/LD)  MIDAS

A Lecture on Linkage Disequilibrium    EH LD Software   Haploview (tutorial)   HWE for SNPs   HWE Calculator

PopGene  (HWE, LD, genetic distance, etc)   Genetic Data Analysis (GDA) (Multilocus LD)

 HAPLOTYPER   PHASE / fastPHASE    UNPHASED

Tools for Pop Genet Analysis  Genetic Analysis Software  Arlequin v3.5  PHYLIP  CLUMP  GENECLUSTER  MVSP

Cold Spring Harbor Laboratory: DNA Learning Center    Online Immunology Book

ASHI Links   BSHI Links   The Immunology Link   Medline   PubMed Central

Links to Evolution-Related Sites    Evolution Glossary    Genetic Epidemiology Glossary   Real Time PCR

Electronic Statistics Textbook and Glossary   GraphPad Guide to Statistical Tests (InStat Manual)   BioStatistics

HIV Sequence Database    CEPH

MHC & Leukemia (PPT)    HLA-DR53 Fact File    HLA & Statistics    HLA & Population Genetics    Genetic Epidemiology

MHC History

Address for bookmark: http://www.dorak.info/hla/link.html

Compiled by M. Tevfik DORAK, MD, PhD

 Last updated on 17 April 2014

 HLA    MHC    Inf & Imm    Evolution    Population Genetics    Genetics    Genetic Epidemiology     Epidemiology     Biostatistics     Glossary     Homepage