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Genome Biology for Genetic Epidemiologists


 Mehmet Tevfik DORAK



Genome Biology and Applied Bioinformatics Course

28/29 March 2016, Istanbul



Day 1 - Lectures


Lecture 1: Human Genome (Biology)

Lecture 2: What Have We Learned from GWAS?

Lecture 3: Non-coding Regions

Lecture 4: Major Databases in Genome Biology

Lecture 5: Major Online Tools in Genome Biology

Lecture 6: Genome Statistics


Day 2 - Practicals

Practical Notes

Practical 1: Genes & Proteins

Practical 2: SNPs

Practical 3: SNP sets

Practical 4: Gene sets

Practical 5: Gene-Gene and Protein-Protein Interactions

Practical 6: Virtual Candidate Gene Association Study


Sample Files

Sample file 1: List of functional SNPs for individual SNP analysis

Sample file 2: Gene sets for enrichment/overlap analysis

Sample file 3: CADD / AVIA input file

Sample file 4: wANNOVAR input file (select ANNOVAR format when submitting)


Mehmet Tevfik Dorak, M.D., Ph.D.

 Genetics     Epidemiology    Biostatistics      HLA      MHC     Glossary      Homepage


11 August 2016