Genome Biology for Genetic Epidemiologists [M.T. DORAK]

Genome Biology for Genetic Epidemiologists

Mehmet Tevfik DORAK

Genome Biology and Applied Bioinformatics Course

Day 1 - Lectures

Introduction

Lecture 1: Human Genome (Biology)

Lecture 2: What Have We Learned from GWAS?

Lecture 3: Non-coding Regions

Lecture 4: Major Databases in Genome Biology

Lecture 5: Major Online Tools in Genome Biology

Lecture 6: Genome Statistics

Day 2 - Practicals

Practical Notes

Practical 1: Genes & Proteins

Practical 2: SNPs

Practical 3: SNP sets

Practical 4: Gene sets

Practical 5: Gene-Gene and Protein-Protein Interactions

Practical 6: Virtual Candidate Gene Association Study

Sample Files

Sample file 1: List of functional SNPs for individual SNP analysis

Sample file 2: Gene sets for enrichment/overlap analysis

Sample file 3: CADD / AVIA input file

Sample file 4: wANNOVAR input file (select ANNOVAR format when submitting)

11 August 2016